Exploring the association of quercetin with liver
fibrosis through network pharmacology and 16S rRNA gene sequencing
Abstract: Background: Liver fibrosis is a chronic wound healing
process of liver injury and gut–liver axis dysregulation has been recently
identified as an important contributor to liver fibrosis progression. Quercetin
has been reported to have anti-inflammatory activity and microbiota-modulating
effects. However, the potential targets of quercetin remain unclear, as does
the relationship between quercetin-associated targets and changes in the gut
microbiota in liver fibrosis. Objectives: The purpose of this study was to use network pharmacology
to predict potential targets of quercetin associated with liver fibrosis and to
explore changes in gut microbiota following treatment with quercetin using a
CCl4-induced rat model. Methods: Eighteen male Sprague–Dawley rats were randomized into
CON group, MOD group and QR group (n = 6 per group). Liver fibrosis was induced
by weekly subcutaneous injection of carbon tetrachloride (CCl4) for
eight weeks. Oral gavage of quercetin (50 mg/kg/day) was performed in QR group.
Histopathological changes were assessed by hematoxylin–eosin staining, Masson
staining and Ishak scoring. Potential targets of quercetin were screened using
network pharmacology, followed by protein–protein interaction (PPI) network
construction and Gene Ontology (GO)/Kyoto Encyclopedia of Genes and Genomes
(KEGG) enrichment analyses. Cecal microbiota composition was determined by 16S
rRNA gene sequencing. Parametric or non-parametric tests were used accordingly,
including one-way ANOVA or Kruskal–Wallis test. Results: Histopathology revealed
significant liver injury and fibrosis in the MOD group relative to the CON
group. The QR group showed lower Ishak fibrosis scores and milder
histopathological features compared with the MOD group. Network pharmacology
analysis identified UBC, UBE2I, RBX1, PSMB7 and UBA1 as hub targets, with KEGG
pathways of interest including the TNF signaling pathway, p53 signaling
pathway, Toll-like receptor signaling pathway and ubiquitin-mediated
proteolysis. Alpha diversity of the cecal microbiota differed significantly
among groups, whereas beta diversity did not. Relative abundance of
Proteobacteria decreased and Firmicutes increased in the QR group relative to
the MOD group. Taxa enrichment analysis identified enrichment of Muribaculaceae
and Ligilactobacillus in the QR group. Conclusion: Histopathology and microbiome
analyses indicated that quercetin intervention was associated with altered
liver histopathological features and shifts in gut microbiota composition in
rats with CCl4-induced liver fibrosis. Network pharmacology
predicted several hub targets and pathways potentially linked to these
observations. As the present analyses are purely correlational and lack
mechanistic validation at the molecular level, no causal relationships are
implied between the predicted targets/pathways and the observed histological or
microbiome changes. These findings should be regarded as hypothesis-generating
and warrant further validation studies.









